Software for neuro-imaging

mne-bids

Library for converting existing files into BIDS compatible structure.

pybids

Interface with datasets conforming to BIDS.

dipy

Diffusion MRI utilities in Python.

petlink

Decode and encode Petlink data streams (32 and 64 bit).

nilearn

Python module for fast and easy statistical learning on NeuroImaging data.

fsleyes

FSLeyes, the FSL image viewer.

nistats

Modeling and Statistical analysis of fMRI data in Python.

Software that is in the queue for inclusion is listed here