Software for computational neuroscience

The following tools are among the software currently available

nest

The neural simulation tool.

Built with MPI support. Please see this page for details.

Brian2

A clock-driven simulator for spiking neural networks.

Moose

Multiscale Neuroscience and Systems Biology Simulator.

Genesis

The GEneral NEural Simulation System.

PyLEMS

LEMS interpreter implemented in Python.

nineML-python

A tool for reading, writing and generally working with 9ML.

neurord

Stochastic reaction-diffusion simulator.

Brian (version 1)

A clock-driven simulator for spiking neural networks (in COPR).

bionetgen

Software for rule-based modeling of biochemical systems.

COPASI

A software application for simulation and analysis of biochemical networks and their dynamics.

Auryn

A simulator for spiking neural networks with plastic synapses.

Built with MPI support.

NEURON

A flexible and powerful simulator of neurons and networks

Currently not built with MPI support, and does not provide Python bindings (both are WIP).

Software that is in the queue for inclusion is listed here